PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00038g01737.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 289aa    MW: 31971.5 Da    PI: 8.6971
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00038g01737.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.56.1e-13555146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                              + +WT eE+e l+ +++++G+g WktI +  +      +R+  ++k++w++
  Peaxi162Scf00038g01737.1  5 KVKWTREEEEALKAGIAKHGTGKWKTILNDPQfasllSNRSNIDLKDKWRN 55
                              579**********************************9************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.235161IPR017930Myb domain
SuperFamilySSF466896.32E-16259IPR009057Homeodomain-like
SMARTSM007172.4E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-14556IPR009057Homeodomain-like
PfamPF002493.2E-9556IPR001005SANT/Myb domain
CDDcd116601.19E-21657No hitNo description
SMARTSM005264.8E-14111176IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467854.46E-14111187IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.6E-13112180IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.199113181IPR005818Linker histone H1/H5, domain H15
PfamPF005384.8E-10115174IPR005818Linker histone H1/H5, domain H15
CDDcd000732.37E-11115173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGNPKVKWTR EEEEALKAGI AKHGTGKWKT ILNDPQFASL LSNRSNIDLK DKWRNMNCTA  60
AQGPKDNSGV SRARPVAIGA LGPSTAQRSV PITSVSKNEA IDDSPKSPQE GKNAPTYSDM  120
IFEALSSMKG SNGSDLGAIV GFIEHRHEVP QNFRKSLSSK LRRLVLQGKL ERVQNCYKIK  180
DAILETKTPT LKQVDVQPRP PPSSAVKFSC ETMEEAARIA VYHVLDADKK SLLAAEAVKD  240
AERVAEMTED AESMLQLIEE IYEQCRFTRS NYLLGLITVC DGLYIHSLR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616026.11e-139PREDICTED: telomere repeat-binding factor 4
RefseqXP_016510058.11e-139PREDICTED: telomere repeat-binding factor 4-like
TrEMBLA0A0V0I3M83e-98A0A0V0I3M8_SOLCH; Putative ovule protein
STRINGPGSC0003DMT4000063692e-96(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.12e-59MYB_related family protein